All modules for which code is available
- plastid.bin.counts_in_region
- plastid.bin.crossmap
- plastid.bin.cs
- plastid.bin.findjuncs
- plastid.bin.get_count_vectors
- plastid.bin.gff_parent_types
- plastid.bin.make_wiggle
- plastid.bin.metagene
- plastid.bin.phase_by_size
- plastid.bin.psite
- plastid.bin.reformat_transcripts
- plastid.bin.slidejuncs
- plastid.bin.test_table_equality
- plastid.genomics.genome_array
- plastid.genomics.genome_hash
- plastid.genomics.map_factories
- plastid.genomics.roitools
- plastid.genomics.seqtools
- plastid.genomics.splicing
- plastid.plotting.colors
- plastid.plotting.plots
- plastid.plotting.plotutils
- plastid.readers.autosql
- plastid.readers.bed
- plastid.readers.bigbed
- plastid.readers.bigwig
- plastid.readers.bowtie
- plastid.readers.common
- plastid.readers.gff
- plastid.readers.gff_tokens
- plastid.readers.psl
- plastid.readers.wiggle
- plastid.util.io.binary
- plastid.util.io.filters
- plastid.util.io.openers
- plastid.util.scriptlib.argparsers
- plastid.util.scriptlib.help_formatters
- plastid.util.scriptlib.template
- plastid.util.services.decorators
- plastid.util.services.exceptions
- plastid.util.services.lists
- plastid.util.services.mini2to3
- plastid.util.services.misc
- plastid.util.services.sets
- plastid.util.unique_fifo