plastid.genomics package

This package contains several object types useful for genomic analyses.

Package overview

Submodule	Description
genome_array	Array-like objects indexed by chromosome, position, and strand
genome_hash	Dictionary-like objects associate features with genomic positions, allowing fast query of which features overlap a region or nucleotide
map_factories	Mapping rules for BAMGenomeArray
roitools	Objects that represent genomic features, such as genes or transcripts
seqtools	Functions for manipulating nucleic acid sequences
splicing	Functions for manipulating splice junctions

Submodules

• plastid.genomics.c_common module
• plastid.genomics.c_common module
• plastid.genomics.c_common module
• plastid.genomics.genome_array module
  • Summary
  • Module contents
  • Extended summary & examples
    • Mapping functions
    • Export to browser tracks
    • Normalization
• plastid.genomics.genome_hash module
  • Summary
  • Module contents
  • Examples
• plastid.genomics.map_factories module
  • Summary
  • Extended summary
  • Examples
  • Implementation
  • See also
• plastid.genomics.map_factories module
  • Summary
  • Extended summary
  • Examples
  • Implementation
  • See also
• plastid.genomics.map_factories module
  • Summary
  • Extended summary
  • Examples
  • Implementation
  • See also
• plastid.genomics.roitools module
  • Summary
    • Module contents
  • Examples
• plastid.genomics.roitools module
  • Summary
    • Module contents
  • Examples
• plastid.genomics.roitools module
  • Summary
    • Module contents
  • Examples
• plastid.genomics.seqtools module
  • Contents
• plastid.genomics.splicing module