plastid.genomics package

This package contains several object types useful for genomic analyses.

Package overview

Submodule Description
genome_array Array-like objects indexed by chromosome, position, and strand
genome_hash Dictionary-like objects associate features with genomic positions, allowing fast query of which features overlap a region or nucleotide
map_factories Mapping rules for BAMGenomeArray
roitools Objects that represent genomic features, such as genes or transcripts
seqtools Functions for manipulating nucleic acid sequences
splicing Functions for manipulating splice junctions