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[BH95]Yoav Benjamini and Yosef Hochberg. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society. Series B (Methodological), 57(1):289–300, 1995.
[DFB+13]Joshua G Dunn, Catherine K Foo, Nicolette G Belletier, Elizabeth R Gavis, and Jonathan S Weissman. Ribosome profiling reveals pervasive and regulated stop codon readthrough in drosophila melanogaster. Elife, 2(0):e01179, 2013. URL: http://view.ncbi.nlm.nih.gov/pubmed/24302569, doi:10.7554/elife.01179.
[FRJ+15]Alexander P. Fields, Edwin H. Rodriguez, Marko Jovanovic, Noam Stern-Ginossar, Brian J. Haas, Philipp Mertins, Raktima Raychowdhury, Nir Hacohen, Steven A. Carr, Nicholas T. Ingolia, Aviv Regev, and Jonathan S. Weissman. A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation. Molecular Cell, 60(5):816–827, Mar 2015. URL: http://www.cell.com/article/S1097276515009053/abstract, doi:10.1016/j.molcel.2015.11.013.
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[OBS+11]Eugene Oh, Annemarie H Becker, Arzu Sandikci, Damon Huber, Rachna Chaba, Felix Gloge, Robert J Nichols, Athanasios Typas, Carol A Gross, Günter Kramer, Jonathan S Weissman, and Bernd Bukau. Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo. Cell, 147(6):1295–308, Dec 2011. URL: http://view.ncbi.nlm.nih.gov/pubmed/22153074, doi:10.1016/j.cell.2011.10.044.
[RME+13]Jose Manuel Rodriguez, Paolo Maietta, Iakes Ezkurdia, Alessandro Pietrelli, Jan-Jaap Wesselink, Gonzalo Lopez, Alfonso Valencia, and Michael L. Tress. Appris: annotation of principal and alternative splice isoforms. Nucleic Acids Research, 41(D1):D110–D117, 2013. URL: http://nar.oxfordjournals.org/content/41/D1/D110.abstract, arXiv:http://nar.oxfordjournals.org/content/41/D1/D110.full.pdf+html, doi:10.1093/nar/gks1058.
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[SGWM+12]Noam Stern-Ginossar, Ben Weisburd, Annette Michalski, Vu Thuy Khanh Le, Marco Y Hein, Sheng-Xiong Huang, Ming Ma, Ben Shen, Shu-Bing Qian, Hartmut Hengel, Matthias Mann, Nicholas T Ingolia, and Jonathan S Weissman. Decoding human cytomegalovirus. Science, 338(6110):1088–93, 2012. doi:10.1126/science.1227919.