Demo datasetΒΆ

We have put together a small demo dataset that is used in the Tour and in Tutorials. It consists of feature annotations, ribosome profiling data, and RNA-seq from the merlin (laboratory) strain of human cytomegalovirus (hCMV).

Downloads:

Part 1 includes the following files:

Filename Contents Source
merlin_NC006273-2.fa Sequence of hCMV merlin strain GenBank, accession no. NC_006273.2
merlin_orfs.bed, merlin_orfs.gtf Coding region models for hCMV strain, plus estimated UTRs [SGWM+12] (CDS). 5’ UTRs estimated as 50 nt upstream of CDS. 3’ UTRs estimated as 100 nt downstream of CDS.
SRR609197_riboprofile_5hr_rep1.bam Ribosome profiling data, 5 hours post hCMV infection, aligned to hCMV merlin strain genome sequence [SGWM+12], raw data available at SRA, accession no. SRR609197
SRR592963_rnaseq_5hr_rep1.bam RNA-seq data, 5 hours post CMV infection, aligned to hCMV merlin strain genome sequence [SGWM+12], raw data available at SRA, accession no. SRR592963

Part 2 includes further replicates, as well as timepoint data from 24 hours post-infection.